Lima, A.F.; Park, S.W.; Fernandes, S.L.; Pinto, J.M.; Souza, E.A. " Production of white liquor - Part I: Operational profile of the caustification area in the national pulp plants" (in Portuguese). The Paper, vol. 7, p. 51-61, 1987.

Lima, A.F.; Park, S.W.; Fernandes, S.L.; Pinto, J.M.; Souza, E.A. ""Production of white liquor - Part II: Operating variables that affect the caustification process" (in Portuguese). The Paper, vol. 8, p. 29-36, 1987.

Park, S.W.; Neves, J.M.; Pinto, J.M.; Lima, A.F. " Process control in the Brazilian pulp and paper industry" (in Portuguese). INSTEC Instrumentation and Process Control, vol. II, no. 9, p. 16-30, 1988.

Pinto, J.M.; Biscaia Jr., E.C. " Numerical solution of ion exchange columns with multiple components " (in Portuguese). Brazilian Journal of Engineering, vol. 7 no.1, p.61-73, 1991.

Pinto, J.M.; Grossmann, I.E. "Optimal cyclic scheduling of multistage continuous multiproduct plants". Computers and Chemical Engineering, vol.18 no.9, p.797-816, 1994.

Pinto, J.M.; Grossmann, I.E. "A Continuous time MILP model for the short term scheduling of multistage batch plants". Industrial & Engineering Chemistry Research, vol.34 no.9, p.3037-3051, 1995.

Pinto, J.M.; Grossmann, I.E. "An alternate MILP model for short term scheduling of batch plants". Industrial & Engineering Chemistry Research, vol.35 no.1, p.338-342, 1996.

Lee, H.; Pinto, J.M.; Grossmann, I.E.; Park, S. "MILP model for refinery short term scheduling of crude oil unloading with inventory management". Industrial & Engineering Chemistry Research, vol.35 no.5, p.1630-1641, 1996.

Pinto, J.M.; Grossmann, I.E. "A continuous time MILP model for short term scheduling of batch plants with preordering constraints". Computers and Chemical Engineering, vol. 20 (suppl. B), p.S1197-1202, 1996.

Pinto, J.M.; Grossmann, I.E. "A logic based approach to scheduling problems with resource constraints". Computers and Chemical Engineering, vol. 21 no. 8, p.801-818, 1997

Souzani, A.B.; Pinto, J.M. "Production optimization of batch plants with predefined allocation". Latin American Applied Research, vol. 28 no. 1/2, p.115-122, 1998.

Pinto, J.M.; Grossmann, I.E. "Assignment and sequencing models for the scheduling of chemical processes". Annals of Operations Research, vol. 81, p.433-466, 1998.

Pinto, J.M.; Turkay, A.; Bolio, B.; Grossmann, I.E. "STBS: A continuous time MILP optimization for short term scheduling of batch plants". Computers and Chemical Engineering, vol. 22, p.1297-1308, 1998.

Moro, L.F.L.; Zanin, A.C.; Pinto, J.M. "A planning model for refinery diesel production". Computers and Chemical Engineering, vol. 22 (suppl.), p. S1039-S1042, 1998.

Gouveia, R.; Pinto, J.M. "Optimal operating policies in activated sludge treatment plants". Computers and Chemical Engineering, vol. 23 (suppl.), p. S853-S856, 1999.

Castro, M.M.; Song, T.W.; Pinto, J.M. “Minimization of operational costs in cooling water systems”. Chemical Engineering Research & Design, vol. 78, Part A, p. 192-201, 2000.

Montagna, J.M.; Iribarren, O.A.; Vecchietti, A.R.; Asenjo, J.A.; Pinto, J.M. “Optimal design of protein production plants with time and size factor process models”. Biotechnology Progress, vol. 16, pp. 228-237, 2000.

Pinto, J.M.; Joly, M.; Moro, L.F.L. “Planning and scheduling models for refinery operations”. Computers and Chemical Engineering, vol. 24, pp. 2259-2276, 2000.

Asenjo, J.A.; Montagna, J.M.; Iribarren, O.A.; Vecchietti, A.R.; Pinto, J.M. “Strategies for the simultaneous optimization of the structure and the process variables of a protein production plant”. Computers and Chemical Engineering, vol. 24, pp. 2277-2290, 2000.

Pinto, J.M.; Gouveia, R. “Incorporating production scheduling in the optimal operation of wastewater treatment plants”. European Symposium on Computer Aided Process Engineering ­ 10, Computer Aided Chemical Engineering, vol. 8, pp. 871-876, 2000.

Pinto, J.M.; Joly, M. “Mixed-integer programming techniques for the scheduling of fuel oil and asphalt production”. European Symposium on Computer Aided Process Engineering ­ 10, Computer Aided Chemical Engineering, vol. 8, pp. 1063-1068, 2000.

Pinto, J.M.; Moro, L.F.L. “A mixed-integer model for LPG scheduling”. European Symposium on Computer Aided Process Engineering ­ 10, Computer Aided Chemical Engineering, vol. 8, pp. 1141- 1146, 2000.

Pinto, J.M.; Gouveia, R. “Optimal policies for activated sludge treatment systems with multi-effluent stream generation”. Brazilian Journal of Chemical Engineering, vol. 17, no. 04-07, pp. 979-990, 2000.

Pinto, J.M.; Moro, L.F.L. “A planning model for petroleum refineries”. Brazilian Journal of Chemical Engineering, vol. 17, no. 04-07, pp. 575-586, 2000.

Pinto, J.M.; Castro, M.M.; Song, T.W. “Operational cost minimization in cooling water systems”. Brazilian Journal of Chemical Engineering, vol. 17, no. 04-07, pp. 649-658, 2000.

Giudici, R.; Pinto, J.M. “Optimization of a cocktail of initiators for suspension polymerization of vinyl chloride in batch reactors”. Chemical Engineering Science, vol. 56, pp. 1021-1028, 2001.

Pinto, J.M.; Montagna, J.M.; Iribarren, O.A.; Vecchietti, A.R.; Asenjo, J.A. “Process performance models in the optimization of protein production plants”. Biotechnology and Bioengineering, vol. 74, no. 6, pp. 451-465, 2001.

Vásquez-Alvarez, E.; Lienqueo, M.E.; Pinto, J.M. “Optimal synthesis of protein purification processes”. Biotechnology Progress, vol. 17, pp. 685-696, 2001.

Montagna, J.M.; Vecchietti, A.R.; Iribarren, O.A.; Pinto, J.M.; Asenjo, J.A. “The role of process variables in the design of multiproduct batch protein production plants”, Latin American Applied Research, vol. 31, no. 5, pp. 411-417, 2001.

Pinto, J.M.; Asenjo, J.A.; Montagna, J.M.; Vecchietti, A.R.; Iribarren, O.A. “Incorporating process information in the optimal design of biotechnological plants”, Latin American Applied Research, vol. 31, no. 5, pp. 487-493, 2001.

Alvarez, E.V., Lienqueo, M.E.; Pinto, J.M. “Optimal synthesis of multistep protein purification processes”, Latin American Applied Research, vol. 31, no. 4, pp. 373-381, 2001.

Alle, A.; Pinto, J.M., “Simultaneous scheduling and operational optimization of multiproduct continuous plants”, Industrial & Engineering Chemistry Research, vol. 41, pp. 2689-2704, 2002.

Más, R.; Pinto, J.M., "A mixed-integer optimization strategy for oil supply in distribution complexes", Optimization and Engineering, vol. 4, pp. 23-64, 2003.

Gut, J.A.W.; Pinto, J.M., “Modeling of plate heat exchangers with generalized configurations”, International Journal of Heat and Mass Transfer, vol. 46, no. 14, p.2571-2585, 2003.

Rejowski Jr., R.; Pinto, J.M., "Scheduling of a multiproduct pipeline system", Computers & Chemical Engineering, vol. 27, pp. 1229-1246, 2003.